Genome annotation based on subsequence analysis, 2005-2007, funded by Scientific and Technical Research Council of Turkey (TUBITAK), principal investigator
Computational Analysis of DNA Sequences, 2004-2005, funded by Virginia Bioinformatics Insitute, co-principal investigator
Intelligent Detection of Geographical Objects from Satelite Images, 2004-2006, funded by Scientific and Technical Research Council of Turkey (TUBITAK)-EGIDE (France), co-principal investigator
Content based image indexing, 1998-2003, funded by Ministère des Affaires Etrangères (France), co-principal investigator
Vision based 3D virtual object modeler, 2000-2002, funded by Scientific and Technical Research Council of Turkey (TUBITAK), principal investigator
Texture model based unsupervised segmentation of remotely sensed images, 1999-2001, funded by State Planning Agency (DPT), principal investigator
Form archiving prototype system, 1996-1999, funded by Information Technologies and Electronics Research Institute (BILTEN), principal investigator